THE CORAL REEF 
MONITORING MANUAL

Last Updated: 30 April 2025

What is a Monitoring Ladder?

Every tier / ladder step measures the same core facts—live-coral cover, which species are present, how many of each, and how key indicator species are doing.

What changes as you move up the tiers is how you collect those facts: the gear becomes more precise, you cover more seafloor, and results arrive faster.


Think of this as a rough guide on how current capabilities can have an impact on coral reef monitoring at every organizational level. Scroll down to see the typical gear needed for a beginner to start reef monitoring.

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Tier-by-tier detail

Tier 0 – Awareness swims

Typical users School groups, eco-tourists, brand-new community projects.

What they actually do People snorkel over the reef with a guide. Picture cards show the difference between hard coral, soft coral and a bleached patch. No numbers yet—this stage simply builds excitement and reef literacy.

Cost & skill Mask, snorkel, laminated ID cards—well under 100 USD. A half-day talk is enough.

When to consider Tier 1 As soon as the group wants real numbers that can be tracked year to year.

Tier 1 – Manual community surveys

Typical users Local NGOs, dive clubs, small marine-reserve staff, Reef Check-style citizen-science teams.

What they do

  1. Lay a 50-metre tape on the reef.
  2. Volunteers jot down live-coral cover every 50 cm and count fish and invertebrates inside a belt next to the tape.
  3. Results go into a spreadsheet or directly into MariMap when internet is available.

Cost & skill Startup gear runs 200–500 USD (tapes, slates, GPS, action cam). A two-to-three-day field course turns confident snorkellers or divers into reliable surveyors.

Strength Inexpensive; unbeatable for community engagement.

Limitation Accuracy depends on observer skill, and the small area sampled can miss patchy problems.

Tier 2 – Semi-autonomous photo-transects

Typical users Regional environment offices, university field classes, citizen-science projects that have already logged Tier 1 data.

What they do

  1. Divers tow a camera bar or fly a hobby drone to take overlapping photos along the same 50-m lines.
  2. Images upload to MariMap.
  3. Coral-AI and Fish-AI automatically tag corals, count colonies, measure percent cover and tally common fish.
  4. Dashboards display trends within minutes or a few hours—complete with confidence bars.

Cost & skill $ 200 - 1000 buys a good action camera with proper lighting (attachments), tray or tow-sled and a basic drone. Each survey run costs roughly $1000 (fuel, cloud time). One week of training covers photo-mosaics and Coral-AI use.

Strength You may map ten to twenty times the area per day, and the photo archive is a permanent audit trail.

Limitation Needs a laptop, steady electricity and basic internet to push imagery to the cloud.

Tier 3 – Fully autonomous surveys

Typical users National park services, blue-carbon verification projects, offshore industries with strong compliance budgets.

What they do

  1. An AUV (autonomous underwater vehicle) or compact ROV flies pre-programmed tracks, collecting 4K video, multibeam depth and even eDNA water samples.
  2. On-board computers run Coral-AI / Fish-AI in real time; if bleaching or a crown-of-thorns spike appears, an alert pings managers immediately.
  3. The system produces high-resolution 3-D maps of reef rugosity to millimetre accuracy.

Cost & skill Hardware (especially a good camera, ROV set up) begins around $3 - 5000; a typical mission costs $400–800. Two weeks of vendor training turn staff into competent pilots and maintainers. An option is also to rent a local ROV near you, or through one of our partners in Europe.

Strength Unmatched coverage, repeatability and speed—sufficient for carbon-credit audits or courtroom-quality evidence.

Limitation High capital cost, import permits and the need for skilled technicians.

When to climb to the next tier

  • Precision gapManual counts swing by ±10 percentage points and conceal real change → Tier 2’s photos fix that.
  • Spatial gapOne 100 m transect barely samples a 10 ha lagoon → Drone mosaics (Tier 2) or AUV grids (Tier 3) solve it.
  • Time gapCrown-of-thorns outbreaks can double in weeks → Near-real-time Tier 3 alerts are essential.
  • Compliance gapDonors or carbon auditors demand photographic or AI-verified proof → Tier 2 usually suffices, Tier 3 for ultra-high resolution.

Whenever two or more gaps start to bite, it saves money in the long run to invest in the next tier.

Estimated budgets for each Tier

  • Tier 0 under $100 total.
  • Tier 1 $200 – 500 to start; about 50 per survey.
  • Tier 2 ~$1000 setup; roughly $1000 per survey.
  • Tier 3 at least $2000 hardware (for purchase); $400–800 per mission.

Constant metrics across all tiers

No matter which tier you operate in, you will always record:

  • Live-coral cover (our headline health metric).
  • Species richness (how many species).
  • Abundance (how many individuals of each).
  • Biodiversity index—often the Shannon number, written plainly as
    • H′ = – Σ (p × ln p),
    • where p is “this species’ share of all individuals.”
  • Indicator populations—herbivorous fish, crown-of-thorns starfish, reef-building coral genera, etc.

What improves as you climb the tiers is accuracy, area, and speed, not the fundamental questions.
Start where your budget lets you; structure your data so it flows into MariMap; and move up a tier whenever precision, coverage or response time becomes critical.

log in to START MAPPING

Typical Gear

Item List & Purpose

① Fiberglass tape (50 m)Lays the fixed-length transect for point-intercept and photo passes.

② PVC quadrat (1 × 1 m)Spot-checks habitat complexity; reference scale for Coral-AI image tiles.

③ Slate + golf pencilManual point-intercept tally every 0 .5 m; backup if camera fails.

④ Mask, snorkel, finsMinimum snorkel kit—Tier 1 teams need no SCUBA.

⑤ Action camera on gripCaptures stills/video every 0 .5 m for Coral-AI processing.

⑥ Hand-held GPS & spareLogs start/stop of each transect; embeds EXIF geopoint in images.

⑦ Twin orange SMB buoysMark transect ends; serve as surface-safety reference.

⑧ Deploy-line & reelKeeps SMB vertical; doubles as emergency buddy line.

⑨ Colour-cal card (24-patch)Ensures Coral-AI colour correction, compensating for depth/lighting.

⑩ Waterproof phone & drybagRuns Marimap Capture app; previews images, pushes metadata offline.

⑪ Compact drone (Tier 1.3 add-on)Orthomosaic of the site; maps coral rubble fields and entry/exit.

⑫ Spare batteries & SD cards (in Pelican case)Enough capacity for full belt of imagery plus redundancy.